CACR Research Publications » biology

An efficient method for computing steady state solutions with Gillespie’s direct method

cacrweb — Thu, 11 Nov 2010 19:03:47 +0000

J. Chem. Phys. 133, 144108 (2010); doi:10.1063/1.3489354 (7 pages)

S. Mauch and M. Stalzer

(Abstract)

A Dynamic Model of Interactions of Ca2+, Calmodulin, and Catalytic Subunits of Ca2+/Calmodulin-Dependent Protein Kinase I

cacrweb — Fri, 12 Feb 2010 18:27:45 +0000

PLoS Computational Biology 6(2): e1000675. doi:10.1371/journal.pcbi.1000675 (2010)

Shirley Pepke, Tamara Kinzer-Ursem, Stefan Mihalas, Mary B. Kennedy

Article

Enabling Computational Plant Development: From Confocal Images to Finite Element Simulations

cacrweb — Mon, 14 Sep 2009 16:38:08 +0000

In Computational Methods in Image Analysis, 10th US National Congress of Computational Mechanics, Columbus, Ohio, USA, July 16 – 19 2009.

Alexandre Cunha

(PDF)

Computational Morphodynamics: A modeling framework to understand plant growth

cacrweb — Wed, 09 Sep 2009 17:56:50 +0000

Annual Review of Plant Biology. Volume 61, Page 65-87, 2010

Vijay Chickarmane, Adrienne H.K Roeder, Paul T Tarr, Alexandre Cunha, Cory Tobin, Elliot M Meyerowitz.

(Article)

Computation for Chip-seq and RNA-seq studies

cacrweb — Tue, 08 Sep 2009 22:12:21 +0000

Nature Methods 6, S22-S32,15 October 2009.

Shirley Pepke, Barbara Wold, and Ali Mortazavi

Fast Nonlocal Means Denoising of cryoEM Images

cacrweb — Thu, 19 Feb 2009 18:28:06 +0000

Asia-Pacific Congress on Electron Tomography, Brisbane, Australia, Jan 31 – Feb 4, 2009.

Alexandre Cunha, Jerome Darbon, Grant Jensen.

Computational Morphogenesis. Tools for Simulating Cell Growth and Division in Arabidopsis thaliana

cacrweb — Thu, 19 Feb 2009 18:27:13 +0000

In: Bioimage Informatics Conference, Janelia Farm Research Campus, Howard Hughes Medical Institute, Chevy Chase, Maryland, April 5-8, 2009.

Alexandre Cunha, Adrienne Roeder, Marcus Heisler, Eric Mjolsness, Elliot Meyerowitz.

Efﬁcient Formulations for Exact Stochastic Simulation of Chemical Systems

cacrweb — Mon, 09 Feb 2009 23:05:32 +0000

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 30 April 2009

Sean Mauch and Mark Stalzer

(Abstract PDF) (Link to article)

Timing of endoreduplication controls cell size

cacrweb — Fri, 19 Sep 2008 18:29:06 +0000

FASEB Conference 2008.

Adrienne H. K. Roeder, Vijay S. Chickarmane, Michael C. Burl, Alexandre Cunha, Aida Sun, Lisa Yee, Carolyn Ohno, and Elliot M. Meyerowitz.

Mathematics of Electron Microscope Tomography

cacrweb — Fri, 11 Jul 2008 18:34:14 +0000

In Electron Microscope Tomography, Three Dimensional Reconstruction and Data Analysis, Minisymposium, SIAM Annual Meeting, San Diego, California, July 7-11, 2008.

Albert Lawrence, Alexandre Cunha, Sebastien Phan.