Enabling Computational Plant Development: From Confocal Images to Finite Element Simulations

In Computational Methods in Image Analysis, 10th US National Congress of Computational Mechanics, Columbus, Ohio, USA, July 16 – 19 2009.

Alexandre Cunha

(PDF)

Filtering and Segmentation Models for Computational Image Analysis

Presentation. Kavli Institute for Theoretical Physics, University of California Santa Barbara, September 2009.

Alexandre Cunha

(Video of Presentation)

Computational Morphodynamics: A modeling framework to understand plant growth

Annual Review of Plant Biology. Volume 61, Page 65-87, 2010

Vijay Chickarmane, Adrienne H.K Roeder, Paul T Tarr, Alexandre Cunha, Cory Tobin, Elliot M Meyerowitz.

(Article)

Computation for Chip-seq and RNA-seq studies

Nature Methods 6, S22-S32,15 October 2009.

Shirley Pepke, Barbara Wold, and Ali Mortazavi