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A User’s Guide to the Encyclopedia of DNA Elements (ENCODE)
The ENCODE Project Consortium (Shirley Pepke)
PLoS Biol 9(4): e1001046.doi:10.1371/journal.pbio.1001046
(link)
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High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation
Genome Res. Published in Advance March 7, 2011,doi:10.1101/gr.104018.10
Anil Ozdemir, Katherine I. Fisher-Aylor, Shirley Pepke, Manoj Samanta, Leslie Dunipace, Kenneth McCue, Lucy Zeng, Nobuo Ogawa, Barbara J. Wold, and Angelike Stathopoulos
(Link)
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Computational morphodynamics of plants: integrating development over space and time
Nature Reviews Molecular Cell Biology,Published online: 02 March 2011 | doi:10.1038/nrm3079
Adrienne H. K. Roeder, Paul T. Tarr, Cory Tobin, Xiaolan Zhang, Vijay Chickarmane, Alexandre Cunha, and Elliot M. Meyerowitz.
(Link)
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An efficient method for computing steady state solutions with Gillespie’s direct method
J. Chem. Phys. 133, 144108 (2010); doi:10.1063/1.3489354 (7 pages)
S. Mauch and M. Stalzer
(Abstract)
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Cell Image Analysis as a Basis for Understanding Plant Growth
Bioimage Informatics 2010, September 17-19, 2010, Pittsburgh, Pennsylvania, USA.
Alexandre Cunha, Adrienne Roeder, Bruce Shapiro, Paul Tarr, Cory Tobin, Elliot Meyerowitz
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Segmenting the Sepal and Shoot Apical Meristem of Arabidopsis Thaliana
32nd Annual International IEEE Engineering in Medicine and Biology Conference, August 31 – September 4, 2010, Buenos Aires, Argentina.
Alexandre Cunha, Adrienne H.K. Roeder, Elliot M. Meyerowitz
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Parallel Denoising
In SIAM Conference on Imaging Science, Chicago, Illinois, April 12-14, 2010.
Alexandre Cunha, Jerome Darbon.
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In vivo Bioimaging Analysis for Simulating Plant Growth Regulation
In SIAM Conference on Life Sciences. Pittsburgh, Pennsylvania, July 12-15, 2010
A. Cunha, A. Roeder, P. Tarr, C. Tobin, V. Chickarmane, E. Meyerowitz.
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Using Geometric Markers to Predict the Cell Division Plane in Meristem Cells
Functional-Structural Plant Models Workshop, September 12-17, 2010, University of California at Davis.
Bruce Shapiro, Marcus Heisler, Cory Tobin, Alexandre Cunha, Andrew Davis, Eric Mjolsness, Elliot Meyerowitz
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Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana.
PLoS Biology 8(5), 2010, pages: e1000367.
Adrienne H. K. Roeder, Vijay Chickarmane, Alexandre Cunha, Boguslaw Obara, B. S. Manjunath, Elliot M. Meyerowitz
(Article)